Variant report

Variant rs3917612
Chromosome Location chr1:95002811-95002812
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94956200-95004000 Weak transcription Rectal Smooth Muscle rectum
2 chr1:94958600-95004200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr1:94965600-95006400 Weak transcription Colon Smooth Muscle Colon
4 chr1:94970400-95003800 Weak transcription Stomach Smooth Muscle stomach
5 chr1:94972200-95004400 Weak transcription A549 lung
6 chr1:94979200-95005000 Weak transcription Primary hematopoietic stem cells short term culture blood
7 chr1:94986000-95006200 Weak transcription Liver Liver
8 chr1:94991600-95004000 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr1:94993600-95004800 Weak transcription HSMMtube muscle
10 chr1:94994000-95003600 Weak transcription Brain Germinal Matrix brain
11 chr1:94994000-95003800 Weak transcription Brain Substantia Nigra brain
12 chr1:94994400-95005400 Weak transcription ES-WA7 Cell Line embryonic stem cell
13 chr1:94994600-95003800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr1:94994600-95005200 Weak transcription Esophagus oesophagus
15 chr1:94994600-95006200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:94995200-95006200 Weak transcription Spleen Spleen
17 chr1:94995600-95003200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr1:94995600-95003400 Strong transcription HUES64 Cell Line embryonic stem cell
19 chr1:94995800-95003000 Strong transcription ES-I3 Cell Line embryonic stem cell
20 chr1:94995800-95004000 Strong transcription HSMM muscle
21 chr1:94996800-95005200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
22 chr1:94997600-95005000 Weak transcription Dnd41 blood
23 chr1:94997600-95005200 Weak transcription Gastric stomach
24 chr1:94998000-95004000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
25 chr1:94998200-95004000 Weak transcription Fetal Kidney kidney
26 chr1:94999000-95005400 Weak transcription Primary monocytes fromperipheralblood blood
27 chr1:94999800-95003400 Strong transcription Sigmoid Colon Sigmoid Colon
28 chr1:95000200-95003000 Weak transcription Muscle Satellite Cultured Cells --
29 chr1:95000400-95003600 Genic enhancers Placenta Amnion Placenta Amnion
30 chr1:95000400-95005600 Transcr. at gene 5' and 3' Breast Myoepithelial Primary Cells Breast
31 chr1:95000800-95003000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:95000800-95003000 Weak transcription Brain Inferior Temporal Lobe brain
33 chr1:95001000-95003800 Weak transcription iPS-15b Cell Line embryonic stem cell
34 chr1:95001000-95003800 Weak transcription Brain Cingulate Gyrus brain
35 chr1:95001000-95004200 Genic enhancers HepG2 liver
36 chr1:95001200-95006400 Weak transcription Small Intestine intestine
37 chr1:95001400-95006600 Transcr. at gene 5' and 3' HMEC breast
38 chr1:95001600-95003800 Weak transcription H1 Cell Line embryonic stem cell
39 chr1:95001600-95003800 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
40 chr1:95001600-95003800 Weak transcription Osteobl bone
41 chr1:95001600-95004600 Transcr. at gene 5' and 3' Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr1:95001600-95006200 Weak transcription Fetal Muscle Trunk muscle
43 chr1:95001600-95007400 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr1:95001600-95007800 Active TSS Brain Dorsolateral Prefrontal Cortex brain
45 chr1:95001800-95003800 Weak transcription Placenta Placenta
46 chr1:95001800-95006000 Weak transcription Monocytes-CD14+_RO01746 blood
47 chr1:95001800-95006200 Active TSS Rectal Mucosa Donor 29 rectum
48 chr1:95001800-95007000 Transcr. at gene 5' and 3' IMR90 fetal lung fibroblasts Cell Line lung
49 chr1:95001800-95007800 Active TSS Brain Hippocampus Middle brain
50 chr1:95002000-95004000 Weak transcription HUES48 Cell Line embryonic stem cell

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