Variant report

Variant	rs7537553
Chromosome Location	chr1:94907887-94907888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1337857	1.00[MEX][hapmap]
rs2094824	1.00[MEX][hapmap]
rs3917612	1.00[AMR][1000 genomes]
rs6662765	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs6673971	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94885200-94915000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:94888400-94914600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:94889200-94914200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:94894600-94914800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:94899200-94914800	Weak transcription	HSMM	muscle
6	chr1:94901800-94911200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:94903200-94908200	Weak transcription	Fetal Kidney	kidney
8	chr1:94904600-94910400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:94904600-94910600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr1:94904600-94914800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:94904800-94908200	Weak transcription	A549	lung
12	chr1:94904800-94909000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:94905200-94908000	Weak transcription	Colonic Mucosa	Colon
14	chr1:94905600-94909600	Weak transcription	Fetal Thymus	thymus
15	chr1:94906200-94910800	Weak transcription	Gastric	stomach
16	chr1:94906200-94912000	Weak transcription	Colon Smooth Muscle	Colon
17	chr1:94906200-94914600	Weak transcription	Left Ventricle	heart
18	chr1:94906200-94915200	Weak transcription	Pancreas	Pancrea
19	chr1:94906600-94908600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr1:94907200-94909000	Weak transcription	Thymus	Thymus
21	chr1:94907200-94911400	Weak transcription	Liver	Liver
22	chr1:94907800-94908400	ZNF genes & repeats	Primary B cells from cord blood	blood
23	chr1:94907800-94909400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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