Variant report

Variant	rs3917708
Chromosome Location	chr1:169584964-169584965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1800806	1.00[EUR][1000 genomes]
rs3917684	1.00[EUR][1000 genomes]
rs3917694	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3917695	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3917720	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3917722	1.00[EUR][1000 genomes]
rs56720151	1.00[EUR][1000 genomes]
rs57554347	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59380209	0.83[EUR][1000 genomes]
rs7547389	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169570400-169585400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:169576600-169585200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:169579800-169587600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:169581000-169585400	Weak transcription	Placenta	Placenta
5	chr1:169581600-169587600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr1:169582000-169585800	Enhancers	Primary T cells from cord blood	blood
7	chr1:169582400-169586200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:169584200-169592600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr1:169584400-169585400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr1:169584600-169585400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:169584800-169585200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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