Variant report

Variant	rs7547389
Chromosome Location	chr1:169603185-169603186
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1800806	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3917684	0.83[EUR][1000 genomes]
rs3917694	0.83[EUR][1000 genomes]
rs3917695	0.83[EUR][1000 genomes]
rs3917708	0.83[EUR][1000 genomes]
rs3917711	1.00[AMR][1000 genomes]
rs3917720	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3917722	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56720151	0.83[EUR][1000 genomes]
rs57554347	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59380209	1.00[EUR][1000 genomes]
rs6129	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169602200-169603400	ZNF genes & repeats	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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