Variant report

Variant	rs3918169
Chromosome Location	chr7:150694606-150694607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr7:150694065-150694620	HL-60	blood:	n/a	n/a
2	CBX3	chr7:150693426-150694645	K562	blood:	n/a	n/a
3	CCNT2	chr7:150694301-150694612	K562	blood:	n/a	n/a
4	NR2F2	chr7:150693581-150694681	K562	blood:	n/a	n/a
5	MAX	chr7:150694251-150695177	K562	blood:	n/a	chr7:150694723-150694732 chr7:150694724-150694731 chr7:150694722-150694733 chr7:150694722-150694732 chr7:150694723-150694732 chr7:150694723-150694733 chr7:150694721-150694729 chr7:150694722-150694733 chr7:150694721-150694734
6	TEAD4	chr7:150693670-150694647	K562	blood:	n/a	n/a
7	HMGN3	chr7:150694361-150694634	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:150694261..150697660-chr7:150712751..150716037,3	MCF-7	breast:
2	chr7:150671828..150674694-chr7:150692153..150695076,2	MCF-7	breast:
3	chr7:150692809..150694996-chr7:150810085..150812572,2	MCF-7	breast:
4	chr7:150694065..150696658-chr7:150697415..150699759,2	MCF-7	breast:

Variant related genes	Relation type
NOS3	TF binding region
ENSG00000164867	Chromatin interaction
ENSG00000133612	Chromatin interaction
ENSG00000181652	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1800779	0.92[ASN][1000 genomes]
rs1800781	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1800782	0.82[ASN][1000 genomes]
rs1800783	0.92[ASN][1000 genomes]
rs2070744	0.90[ASN][1000 genomes]
rs2373962	0.88[ASN][1000 genomes]
rs3730305	0.82[ASN][1000 genomes]
rs3793341	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793342	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3807370	0.85[ASN][1000 genomes]
rs3918174	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3918186	0.82[ASN][1000 genomes]
rs4496877	0.88[ASN][1000 genomes]
rs6946415	0.85[ASN][1000 genomes]
rs6951150	0.88[ASN][1000 genomes]
rs6953274	0.85[ASN][1000 genomes]
rs73167652	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
4	nsv1022246	chr7:150619660-150779924	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv889463	chr7:150640285-150700946	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv889464	chr7:150640285-150723467	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv1017863	chr7:150643928-150779924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
9	nsv539197	chr7:150643928-150779924	Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
10	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
11	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
12	nsv889467	chr7:150645534-150723467	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	nsv889468	chr7:150652419-150696111	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
14	nsv889469	chr7:150657209-150747746	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
15	nsv889470	chr7:150667210-150696111	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
16	esv3392470	chr7:150691544-150694892	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
17	esv3405396	chr7:150691819-150695017	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150686200-150698000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:150688800-150697200	Weak transcription	Pancreas	Pancrea
3	chr7:150692200-150700800	Weak transcription	Gastric	stomach
4	chr7:150692200-150705000	Weak transcription	Ovary	ovary
5	chr7:150692400-150697000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr7:150692400-150698400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr7:150692400-150704200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:150692400-150704400	Weak transcription	Right Atrium	heart
9	chr7:150692600-150694800	Weak transcription	Fetal Heart	heart
10	chr7:150692600-150695000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr7:150692600-150697800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr7:150692600-150698200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr7:150692600-150698200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr7:150692600-150704000	Weak transcription	Left Ventricle	heart
15	chr7:150693200-150694800	Enhancers	Fetal Lung	lung
16	chr7:150693200-150694800	Enhancers	Fetal Muscle Leg	muscle
17	chr7:150693200-150695000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr7:150693200-150697000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr7:150693200-150697600	Enhancers	Primary T cells from cord blood	blood
20	chr7:150693200-150697600	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr7:150693200-150697800	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr7:150693400-150694800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:150693400-150694800	Enhancers	Fetal Intestine Small	intestine
24	chr7:150693400-150694800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr7:150693400-150695000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
26	chr7:150693400-150695000	Enhancers	Fetal Intestine Large	intestine
27	chr7:150693400-150695400	Bivalent Enhancer	Fetal Thymus	thymus
28	chr7:150693400-150697800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
29	chr7:150693400-150697800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr7:150693600-150694800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr7:150693600-150695000	Genic enhancers	Adipose Nuclei	Adipose
32	chr7:150693800-150694800	Enhancers	Primary hematopoietic stem cells	blood
33	chr7:150693800-150696600	Genic enhancers	Spleen	Spleen
34	chr7:150694000-150695000	Weak transcription	Right Ventricle	heart
35	chr7:150694000-150695200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:150694000-150696800	Genic enhancers	Placenta	Placenta
37	chr7:150694000-150697000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr7:150694200-150695000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr7:150694200-150695000	Weak transcription	HUVEC	blood vessel
40	chr7:150694200-150695000	Enhancers	K562	blood
41	chr7:150694200-150699000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:150694200-150699600	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr7:150694400-150694800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:150694400-150695000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr7:150694400-150704400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr7:150694600-150694800	Weak transcription	Fetal Stomach	stomach
47	chr7:150694600-150696200	Weak transcription	Lung	lung
48	chr7:150694600-150700200	Weak transcription	Fetal Brain Female	brain
49	chr7:150694600-150705600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links