Variant report

Variant	rs73167652
Chromosome Location	chr7:150700637-150700638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150697364..150699402-chr7:150699417..150701595,2	MCF-7	breast:
2	chr7:150699504..150701651-chr7:150755109..150756845,2	MCF-7	breast:
3	chr7:150674597..150677558-chr7:150699359..150702536,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164885	Chromatin interaction
ENSG00000164867	Chromatin interaction
ENSG00000164889	Chromatin interaction
ENSG00000055118	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1800782	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1800783	0.80[ASN][1000 genomes]
rs3730305	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793341	0.82[ASN][1000 genomes]
rs3793342	0.82[ASN][1000 genomes]
rs3918169	0.82[ASN][1000 genomes]
rs3918174	0.95[ASN][1000 genomes]
rs3918186	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
4	nsv1022246	chr7:150619660-150779924	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv889463	chr7:150640285-150700946	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv889464	chr7:150640285-150723467	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv1017863	chr7:150643928-150779924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
9	nsv539197	chr7:150643928-150779924	Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
10	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
11	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
12	nsv889467	chr7:150645534-150723467	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	nsv889469	chr7:150657209-150747746	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150692200-150700800	Weak transcription	Gastric	stomach
2	chr7:150692200-150705000	Weak transcription	Ovary	ovary
3	chr7:150692400-150704200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:150692400-150704400	Weak transcription	Right Atrium	heart
5	chr7:150692600-150704000	Weak transcription	Left Ventricle	heart
6	chr7:150694400-150704400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:150694600-150705600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:150694800-150704800	Weak transcription	Fetal Lung	lung
9	chr7:150694800-150705200	Weak transcription	Fetal Intestine Small	intestine
10	chr7:150695000-150705400	Weak transcription	Fetal Intestine Large	intestine
11	chr7:150695600-150704600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:150697000-150701000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:150697000-150704000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr7:150697600-150701400	Genic enhancers	Placenta	Placenta
15	chr7:150697600-150703800	Weak transcription	Primary T cells from cord blood	blood
16	chr7:150697800-150703600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:150697800-150704400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr7:150698200-150703800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr7:150698200-150704000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:150698200-150704000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr7:150698200-150704200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr7:150698400-150703800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr7:150699000-150703600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr7:150699200-150704200	Weak transcription	Right Ventricle	heart
25	chr7:150699400-150702200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr7:150699400-150703600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:150699800-150701000	Enhancers	K562	blood
28	chr7:150699800-150702400	Weak transcription	Spleen	Spleen
29	chr7:150699800-150703600	Weak transcription	Lung	lung
30	chr7:150699800-150706600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:150700000-150702200	Weak transcription	Adipose Nuclei	Adipose
32	chr7:150700200-150704000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr7:150700400-150701000	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr7:150700400-150701000	Bivalent Enhancer	HepG2	liver
35	chr7:150700400-150704400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:150700600-150700800	Enhancers	Fetal Brain Female	brain
37	chr7:150700600-150701000	Enhancers	A549	lung
38	chr7:150700600-150701000	Flanking Active TSS	HUVEC	blood vessel
39	chr7:150700600-150704200	Weak transcription	Stomach Smooth Muscle	stomach

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