Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1022457	0.91[ASN][1000 genomes]
rs2026853	0.81[AFR][1000 genomes]
rs2823502	0.88[ASN][1000 genomes]
rs2823503	0.88[ASN][1000 genomes]
rs2823504	0.89[ASN][1000 genomes]
rs2823505	0.86[AFR][1000 genomes]
rs2823507	0.84[ASN][1000 genomes]
rs2823510	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2823511	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2823517	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs28469763	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs409901	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs412155	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs412843	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs444158	0.96[EUR][1000 genomes]
rs7278727	0.86[AFR][1000 genomes]
rs7281511	0.81[AFR][1000 genomes]
rs8127570	0.89[ASN][1000 genomes]
rs8127734	0.90[ASN][1000 genomes]
rs8128766	0.84[AFR][1000 genomes]
rs9977069	0.84[AFR][1000 genomes]
rs9980260	1.00[ASN][1000 genomes]
rs9983385	0.88[AFR][1000 genomes]
rs9983858	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv964543	chr21:17296262-17338385	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17296800-17300400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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