Variant report

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10482876	0.81[CEU][hapmap]
rs17241416	0.81[CEU][hapmap]
rs17241423	0.89[CEU][hapmap]
rs17241430	0.81[CEU][hapmap]
rs17241444	0.81[CEU][hapmap]
rs17307176	0.81[CEU][hapmap]
rs2026853	0.81[CEU][hapmap]
rs2242676	0.81[CEU][hapmap]
rs2248859	0.92[ASN][1000 genomes]
rs2252133	0.92[ASN][1000 genomes]
rs2404001	0.83[CEU][hapmap]
rs2823471	0.81[CEU][hapmap]
rs2823472	0.81[CEU][hapmap]
rs2823478	0.81[CEU][hapmap]
rs2823489	0.81[CEU][hapmap]
rs2823491	0.81[CEU][hapmap]
rs2823493	0.81[CEU][hapmap]
rs2823499	0.81[CEU][hapmap]
rs2823500	0.81[CEU][hapmap]
rs2823504	0.91[CEU][hapmap];0.94[JPT][hapmap]
rs2823509	0.93[ASN][1000 genomes]
rs2823513	0.92[ASN][1000 genomes]
rs2823516	0.90[ASN][1000 genomes]
rs2823518	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28679848	0.83[ASN][1000 genomes]
rs3787577	0.81[CEU][hapmap]
rs392203	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs409901	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs412155	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs444158	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6517609	0.81[CEU][hapmap]
rs6517613	0.81[CEU][hapmap]
rs6517648	0.81[CEU][hapmap]
rs6517652	0.81[CEU][hapmap]
rs7281511	0.81[CEU][hapmap]
rs7283467	0.89[ASN][1000 genomes]
rs7283707	0.81[CEU][hapmap]
rs8127158	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv964543	chr21:17296262-17338385	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs412843	TACC2	cis	Temporal Cortex	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17300400-17302200	Enhancers	HSMM	muscle
2	chr21:17300600-17302400	Enhancers	HSMMtube	muscle
3	chr21:17300600-17305800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr21:17300800-17302000	Enhancers	Fetal Heart	heart
5	chr21:17300800-17302000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr21:17300800-17303400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search: