Variant report

Variant	rs3925034
Chromosome Location	chr5:75778176-75778177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10039356	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2068434	0.86[JPT][hapmap]
rs4074256	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4289541	0.87[AMR][1000 genomes]
rs4703708	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4704318	0.86[JPT][hapmap]
rs6453224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75768400-75780000	Weak transcription	Esophagus	oesophagus
2	chr5:75769600-75816600	Weak transcription	Primary B cells from cord blood	blood
3	chr5:75770000-75779600	Weak transcription	GM12878-XiMat	blood
4	chr5:75772200-75782200	Enhancers	Stomach Mucosa	stomach
5	chr5:75774600-75780800	Enhancers	Small Intestine	intestine
6	chr5:75775000-75785800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr5:75775400-75778200	Weak transcription	Brain Germinal Matrix	brain
8	chr5:75775400-75778400	Weak transcription	Fetal Brain Male	brain
9	chr5:75775600-75787600	Weak transcription	Gastric	stomach
10	chr5:75776000-75778400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr5:75776000-75783800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:75776200-75778400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:75776200-75779200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:75776200-75779200	Weak transcription	Fetal Brain Female	brain
15	chr5:75776200-75779400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr5:75776200-75779400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr5:75776200-75779400	Weak transcription	Placenta	Placenta
18	chr5:75776200-75779600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:75776200-75779600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr5:75776200-75782400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:75776200-75783600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr5:75776200-75784600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:75776200-75785800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr5:75776200-75787600	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr5:75776200-75801000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr5:75776400-75778400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr5:75776400-75778800	Weak transcription	Liver	Liver
28	chr5:75776400-75782000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr5:75776400-75791200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr5:75776400-75800200	Weak transcription	Primary T cells from cord blood	blood
31	chr5:75776600-75778200	Weak transcription	HepG2	liver
32	chr5:75776600-75778600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr5:75776600-75778800	Weak transcription	Colonic Mucosa	Colon
34	chr5:75776600-75779200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr5:75776800-75778200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr5:75776800-75784800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:75776800-75791000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr5:75777000-75778200	Enhancers	K562	blood
39	chr5:75777000-75778600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr5:75777000-75779000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr5:75777000-75779600	Weak transcription	Fetal Intestine Small	intestine
42	chr5:75777000-75779800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr5:75777200-75779600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr5:75777200-75780200	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr5:75777400-75779800	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr5:75777400-75781600	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr5:75777600-75778200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr5:75777600-75778400	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr5:75777600-75778400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr5:75777600-75778600	Enhancers	Primary T helper naive cells from peripheral blood	blood

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