Variant report

Variant	rs4703708
Chromosome Location	chr5:75775000-75775001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75768624..75770806-chr5:75772942..75775472,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10036503	1.00[JPT][hapmap]
rs10039356	0.89[EUR][1000 genomes]
rs3925034	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4074256	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6453224	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75758200-75775000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:75768400-75780000	Weak transcription	Esophagus	oesophagus
3	chr5:75769600-75775600	Enhancers	K562	blood
4	chr5:75769600-75816600	Weak transcription	Primary B cells from cord blood	blood
5	chr5:75770000-75775000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr5:75770000-75775200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr5:75770000-75777600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr5:75770000-75779600	Weak transcription	GM12878-XiMat	blood
9	chr5:75770200-75775400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:75771000-75775400	Weak transcription	Fetal Thymus	thymus
11	chr5:75771000-75776000	Weak transcription	Primary T cells from cord blood	blood
12	chr5:75771400-75775800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr5:75771600-75775000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr5:75771600-75775200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:75771600-75778000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:75771800-75775600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:75772000-75775000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr5:75772200-75775200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr5:75772200-75775200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:75772200-75782200	Enhancers	Stomach Mucosa	stomach
21	chr5:75772400-75775000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr5:75772400-75777800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr5:75772600-75775000	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr5:75772600-75775200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr5:75772600-75775600	Weak transcription	Fetal Kidney	kidney
26	chr5:75772600-75776600	Enhancers	Duodenum Mucosa	Duodenum
27	chr5:75773800-75777000	Enhancers	Fetal Intestine Small	intestine
28	chr5:75774200-75775200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:75774200-75775600	Enhancers	Gastric	stomach
30	chr5:75774200-75776200	Enhancers	Primary T cells fromperipheralblood	blood
31	chr5:75774200-75776400	Enhancers	Liver	Liver
32	chr5:75774200-75776600	Enhancers	HepG2	liver
33	chr5:75774200-75776800	Enhancers	Fetal Intestine Large	intestine
34	chr5:75774400-75775000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr5:75774400-75776200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr5:75774400-75776200	Enhancers	Fetal Brain Female	brain
37	chr5:75774400-75776400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr5:75774600-75775400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr5:75774600-75776000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr5:75774600-75777200	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr5:75774600-75777400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr5:75774600-75780800	Enhancers	Small Intestine	intestine
43	chr5:75774800-75775000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr5:75774800-75775000	Enhancers	Pancreas	Pancrea
45	chr5:75774800-75775200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
46	chr5:75774800-75775400	Enhancers	Brain Germinal Matrix	brain
47	chr5:75774800-75775400	Enhancers	Fetal Brain Male	brain
48	chr5:75774800-75775600	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr5:75774800-75776200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr5:75774800-75776200	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links