Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10946157	0.81[AMR][1000 genomes]
rs1998167	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1998168	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4441936	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4710037	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4710038	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4710039	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6456072	0.85[EUR][1000 genomes]
rs6456073	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6921353	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6921526	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7757150	0.86[AMR][1000 genomes]
rs7759638	0.85[AMR][1000 genomes]
rs7772415	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs911203	0.86[AMR][1000 genomes]
rs9295332	0.81[AMR][1000 genomes]
rs9295333	0.81[AMR][1000 genomes]
rs9295335	0.81[AMR][1000 genomes]
rs9347121	0.84[AMR][1000 genomes]
rs9366002	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv886935	chr6:166704744-166726566	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166711000-166714400	Enhancers	Brain Hippocampus Middle	brain
2	chr6:166711800-166714000	Enhancers	Brain Cingulate Gyrus	brain
3	chr6:166712000-166714400	Enhancers	Brain Anterior Caudate	brain
4	chr6:166712000-166715000	Enhancers	Brain Angular Gyrus	brain
5	chr6:166712000-166715800	Enhancers	Brain Substantia Nigra	brain
6	chr6:166712800-166713800	Weak transcription	Brain Inferior Temporal Lobe	brain

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