Variant report

Variant	rs7759638
Chromosome Location	chr6:166723630-166723631
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
PRR18	TF binding region
ENSG00000261420	Chromatin interaction
ENSG00000198818	Chromatin interaction
ENSG00000060762	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10946157	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12214433	0.80[ASN][1000 genomes]
rs12214614	0.80[ASN][1000 genomes]
rs13204594	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1998167	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1998168	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3926288	0.85[AMR][1000 genomes]
rs4441936	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4710037	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4710038	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4710039	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7454264	0.80[ASN][1000 genomes]
rs7757150	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7772415	0.85[AMR][1000 genomes]
rs911203	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9347121	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9366002	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv886935	chr6:166704744-166726566	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886936	chr6:166714024-166731289	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166722400-166723800	Enhancers	Brain Cingulate Gyrus	brain
2	chr6:166722600-166732800	Weak transcription	GM12878-XiMat	blood
3	chr6:166722600-166735600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:166722800-166731200	Weak transcription	Spleen	Spleen
5	chr6:166723000-166731400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:166723000-166732000	Weak transcription	Gastric	stomach
7	chr6:166723200-166727200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:166723200-166732400	Weak transcription	Liver	Liver
9	chr6:166723200-166735400	Weak transcription	Brain Substantia Nigra	brain
10	chr6:166723200-166735600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:166723200-166738800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:166723200-166744200	Weak transcription	Right Atrium	heart
13	chr6:166723600-166724000	Bivalent Enhancer	K562	blood
14	chr6:166723600-166735800	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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