Variant report

Variant	rs393114
Chromosome Location	chr8:78480007-78480008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1510128	0.85[AFR][1000 genomes]
rs1688065	0.85[AFR][1000 genomes]
rs34384008	0.82[AFR][1000 genomes]
rs364875	0.82[AFR][1000 genomes]
rs365193	0.82[AFR][1000 genomes]
rs366962	0.83[AFR][1000 genomes]
rs367335	0.83[AFR][1000 genomes]
rs373912	0.83[AFR][1000 genomes]
rs375246	0.82[AFR][1000 genomes]
rs376638	0.83[AFR][1000 genomes]
rs377046	0.85[AFR][1000 genomes]
rs381103	0.85[AFR][1000 genomes]
rs382065	0.82[AFR][1000 genomes]
rs383723	0.85[AFR][1000 genomes]
rs384029	0.82[AFR][1000 genomes]
rs384046	0.85[AFR][1000 genomes]
rs384089	0.85[AFR][1000 genomes]
rs384686	0.82[AFR][1000 genomes]
rs386673	0.85[AFR][1000 genomes]
rs386790	0.82[AFR][1000 genomes]
rs390442	0.82[AFR][1000 genomes]
rs390671	0.83[AFR][1000 genomes]
rs394556	0.80[AFR][1000 genomes]
rs399431	0.82[AFR][1000 genomes]
rs403035	0.85[AFR][1000 genomes]
rs403872	0.81[AFR][1000 genomes]
rs403995	0.82[AFR][1000 genomes]
rs404615	0.85[AFR][1000 genomes]
rs407355	0.87[AFR][1000 genomes]
rs407905	0.83[AFR][1000 genomes]
rs408174	0.92[AFR][1000 genomes]
rs413303	0.85[AFR][1000 genomes]
rs417681	0.88[AFR][1000 genomes]
rs417710	0.85[AFR][1000 genomes]
rs418849	0.82[AFR][1000 genomes]
rs421312	0.82[AFR][1000 genomes]
rs421431	0.85[AFR][1000 genomes]
rs421501	0.82[AFR][1000 genomes]
rs429375	0.82[AFR][1000 genomes]
rs431962	0.85[AFR][1000 genomes]
rs435565	0.82[AFR][1000 genomes]
rs440274	0.84[AFR][1000 genomes]
rs443456	0.82[AFR][1000 genomes]
rs446476	0.82[AFR][1000 genomes]
rs446931	0.82[AFR][1000 genomes]
rs447108	0.85[AFR][1000 genomes]
rs447119	0.85[AFR][1000 genomes]
rs449955	0.82[AFR][1000 genomes]
rs450428	0.82[AFR][1000 genomes]
rs452704	0.85[AFR][1000 genomes]
rs453442	0.85[AFR][1000 genomes]
rs454032	0.85[AFR][1000 genomes]
rs597249	0.85[AFR][1000 genomes]
rs607114	0.83[AFR][1000 genomes]
rs643587	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891049	chr8:78325885-78565529	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv891050	chr8:78351635-78532763	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv831363	chr8:78367997-78522574	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1033669	chr8:78414508-78704839	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1016506	chr8:78414508-78750343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv539650	chr8:78414508-78750343	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1027588	chr8:78429707-78512574	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv891052	chr8:78445427-78498790	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv465720	chr8:78452222-78551702	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv611568	chr8:78452222-78551702	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv611569	chr8:78477561-78530899	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv611570	chr8:78478497-78530899	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78478400-78481400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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