Variant report

Variant	rs39327
Chromosome Location	chr7:103444671-103444672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10435342	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11496125	0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs12375196	0.83[AFR][1000 genomes]
rs17155888	0.81[LWK][hapmap];0.85[YRI][hapmap]
rs17290575	0.88[JPT][hapmap]
rs2299381	0.81[LWK][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs36078773	0.86[AFR][1000 genomes]
rs3915120	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs39328	0.92[YRI][hapmap];0.91[AFR][1000 genomes]
rs39333	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs39335	0.88[GIH][hapmap]
rs6951931	1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.81[ASN][1000 genomes]
rs6954479	1.00[JPT][hapmap]
rs7341475	0.85[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.81[ASN][1000 genomes]
rs745539	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs39327	ZKSCAN1	cis	cerebellum	SCAN
rs39327	TFR2	cis	cerebellum	SCAN
rs39327	ORC5L	cis	parietal	SCAN
rs39327	TAF6	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103437000-103446000	Weak transcription	HepG2	liver
2	chr7:103440400-103449400	Weak transcription	K562	blood
3	chr7:103444200-103446800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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