Variant report

Variant	rs39333
Chromosome Location	chr7:103451507-103451508
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3915120	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs39327	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs39335	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs39340	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs39344	0.94[ASN][1000 genomes]
rs39345	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103446200-103452000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr7:103450000-103452200	Enhancers	Liver	Liver
3	chr7:103450200-103451600	Flanking Active TSS	K562	blood
4	chr7:103450200-103452800	Enhancers	Fetal Kidney	kidney
5	chr7:103450600-103452400	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr7:103450800-103456600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:103451200-103452200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:103451200-103452400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:103451200-103453800	Enhancers	HepG2	liver
10	chr7:103451200-103455000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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