Variant report

Variant	rs3933496
Chromosome Location	chr5:36183485-36183486
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10512639	0.88[ASN][1000 genomes]
rs10941277	0.86[ASN][1000 genomes]
rs10941278	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10941279	0.88[ASN][1000 genomes]
rs10941281	0.88[ASN][1000 genomes]
rs11739323	0.81[ASN][1000 genomes]
rs11744207	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11745827	0.81[ASN][1000 genomes]
rs11747546	0.88[ASN][1000 genomes]
rs12522905	0.89[ASN][1000 genomes]
rs16902835	0.88[ASN][1000 genomes]
rs2432204	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs249272	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35161198	0.81[ASN][1000 genomes]
rs35647151	0.88[ASN][1000 genomes]
rs3761973	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3789758	0.81[ASN][1000 genomes]
rs67061065	0.82[ASN][1000 genomes]
rs67399512	0.88[ASN][1000 genomes]
rs6879127	0.81[ASN][1000 genomes]
rs6881318	0.89[ASN][1000 genomes]
rs6884331	0.81[ASN][1000 genomes]
rs72744549	0.89[ASN][1000 genomes]
rs72744564	0.86[ASN][1000 genomes]
rs72744565	0.86[ASN][1000 genomes]
rs7716788	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7719686	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv968165	chr5:36182767-36183974	Strong transcription Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36153800-36184400	Strong transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:36154000-36184200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:36154200-36184400	Strong transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:36154200-36184400	Strong transcription	Fetal Thymus	thymus
5	chr5:36154400-36184400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
7	chr5:36158400-36184400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr5:36158600-36184600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr5:36158600-36185600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:36161800-36184400	Strong transcription	Dnd41	blood
11	chr5:36162400-36184400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:36163800-36200600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:36164800-36220800	Weak transcription	Gastric	stomach
14	chr5:36169200-36193200	Weak transcription	Pancreas	Pancrea
15	chr5:36169600-36202400	Weak transcription	Fetal Heart	heart
16	chr5:36171800-36220600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr5:36172000-36185200	Weak transcription	Esophagus	oesophagus
18	chr5:36172000-36229200	Weak transcription	Colonic Mucosa	Colon
19	chr5:36172400-36189400	Weak transcription	Fetal Intestine Small	intestine
20	chr5:36172400-36189600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr5:36174200-36195200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr5:36174400-36190800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr5:36175000-36189600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr5:36175000-36191200	Weak transcription	Aorta	Aorta
25	chr5:36175000-36191600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:36175200-36184400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr5:36175200-36189600	Weak transcription	Spleen	Spleen
28	chr5:36175200-36202400	Weak transcription	Right Ventricle	heart
29	chr5:36175200-36220800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr5:36175400-36189600	Weak transcription	Lung	lung
31	chr5:36175400-36190600	Weak transcription	Ovary	ovary
32	chr5:36175600-36195800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr5:36175600-36222400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr5:36176600-36184400	Strong transcription	HSMM	muscle
35	chr5:36176800-36184400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr5:36177000-36184000	Strong transcription	Placenta	Placenta
37	chr5:36177000-36184400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr5:36177000-36184400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr5:36177200-36183800	Strong transcription	Fetal Muscle Trunk	muscle
40	chr5:36177200-36184200	Strong transcription	Osteobl	bone
41	chr5:36177200-36184400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr5:36177200-36184400	Strong transcription	Adipose Nuclei	Adipose
43	chr5:36177400-36184000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr5:36177800-36186000	Weak transcription	Brain Germinal Matrix	brain
45	chr5:36178600-36184400	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr5:36179000-36184200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr5:36179000-36189400	Weak transcription	Thymus	Thymus
48	chr5:36179000-36189600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr5:36179000-36189600	Weak transcription	Fetal Stomach	stomach
50	chr5:36179000-36222800	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links