The 2.0 version of rSNPBase

Variant report

Variant rs72744549
Chromosome Location chr5:36203418-36203419
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:36154400-36210800 Weak transcription Small Intestine intestine
2 chr5:36164800-36220800 Weak transcription Gastric stomach
3 chr5:36171800-36220600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr5:36172000-36229200 Weak transcription Colonic Mucosa Colon
5 chr5:36175200-36220800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr5:36175600-36222400 Weak transcription Rectal Smooth Muscle rectum
7 chr5:36179000-36222800 Weak transcription H9 Cell Line embryonic stem cell
8 chr5:36179000-36230000 Weak transcription Psoas Muscle Psoas
9 chr5:36179200-36210400 Weak transcription Fetal Kidney kidney
10 chr5:36179200-36212600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr5:36181400-36212800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr5:36182200-36214800 Weak transcription Primary T killer memory cells from peripheral blood blood
13 chr5:36182800-36220400 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr5:36182800-36220600 Weak transcription Brain Angular Gyrus brain
15 chr5:36190000-36220800 Weak transcription Spleen Spleen
16 chr5:36190200-36207400 Strong transcription Dnd41 blood
17 chr5:36190200-36220800 Weak transcription Esophagus oesophagus
18 chr5:36190400-36220800 Weak transcription Lung lung
19 chr5:36190600-36211000 Weak transcription Fetal Stomach stomach
20 chr5:36190600-36227400 Weak transcription Thymus Thymus
21 chr5:36190800-36206200 Weak transcription H1 Cell Line embryonic stem cell
22 chr5:36190800-36211000 Weak transcription Fetal Intestine Small intestine
23 chr5:36191800-36220600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr5:36191800-36230000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr5:36192000-36206000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr5:36192000-36224200 Weak transcription Aorta Aorta
27 chr5:36192600-36227800 Weak transcription HUES6 Cell Line embryonic stem cell
28 chr5:36193600-36220800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr5:36193600-36220800 Weak transcription Pancreas Pancrea
30 chr5:36193800-36203800 Strong transcription Primary T helper cells PMA-I stimulated --
31 chr5:36194000-36207400 Strong transcription Breast Myoepithelial Primary Cells Breast
32 chr5:36194200-36207800 Weak transcription Stomach Mucosa stomach
33 chr5:36195400-36205200 Strong transcription Liver Liver
34 chr5:36196600-36210000 Weak transcription HSMMtube muscle
35 chr5:36196600-36236600 Weak transcription GM12878-XiMat blood
36 chr5:36196800-36205200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr5:36197000-36212400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr5:36197800-36220800 Weak transcription Placenta Amnion Placenta Amnion
39 chr5:36197800-36224800 Weak transcription HUES48 Cell Line embryonic stem cell
40 chr5:36198000-36238400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
41 chr5:36198200-36214800 Weak transcription iPS-20b Cell Line embryonic stem cell
42 chr5:36199400-36203600 Strong transcription Primary monocytes fromperipheralblood blood
43 chr5:36199400-36204400 Strong transcription Rectal Mucosa Donor 29 rectum
44 chr5:36199600-36207400 Strong transcription Primary T cells from cord blood blood
45 chr5:36199800-36203800 Strong transcription Duodenum Mucosa Duodenum
46 chr5:36199800-36204600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
47 chr5:36199800-36205400 Weak transcription Stomach Smooth Muscle stomach
48 chr5:36200000-36204200 Strong transcription Adipose Nuclei Adipose
49 chr5:36200000-36229600 Weak transcription Primary T killer naive cells fromperipheralblood blood
50 chr5:36200200-36220800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015