Variant report

Variant	rs3935366
Chromosome Location	chr11:46171404-46171405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10838570	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11038775	0.89[JPT][hapmap]
rs11038791	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7118159	0.89[JPT][hapmap]
rs7128538	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7924340	0.89[JPT][hapmap]
rs7936425	0.88[ASW][hapmap];0.81[MKK][hapmap]
rs9300054	0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3935366	ARHGAP1	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46170400-46171800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:46170800-46172000	Enhancers	K562	blood
3	chr11:46171000-46171600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr11:46171000-46171600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr11:46171200-46172800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:46171400-46171600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:46171400-46171600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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