Variant report

Variant	rs7128538
Chromosome Location	chr11:46180693-46180694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10160437	0.88[AFR][1000 genomes]
rs10838570	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11038791	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3935366	0.88[ASW][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap];0.89[MKK][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7936425	0.94[ASW][hapmap];0.92[CEU][hapmap];0.88[LWK][hapmap];0.92[MKK][hapmap];0.89[YRI][hapmap]
rs7943379	0.85[CEU][hapmap];0.84[YRI][hapmap]
rs9300054	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7128538	ARHGAP1	cis	parietal	SCAN
rs7128538	MTCH2	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46179600-46181000	Enhancers	NHEK	skin
2	chr11:46179600-46181400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:46179600-46181600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:46180000-46183000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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