The 2.0 version of rSNPBase

Variant report

Variant rs3935749
Chromosome Location chr1:214600247-214600248
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214572600-214612600 Weak transcription Fetal Intestine Small intestine
2 chr1:214576800-214612200 Weak transcription Fetal Intestine Large intestine
3 chr1:214581400-214601200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr1:214584200-214603000 Weak transcription Fetal Adrenal Gland Adrenal Gland
5 chr1:214591400-214612800 Weak transcription Pancreas Pancrea
6 chr1:214591600-214600400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
7 chr1:214591600-214601200 Weak transcription Gastric stomach
8 chr1:214591600-214601400 Weak transcription Lung lung
9 chr1:214592000-214602200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr1:214593200-214613000 Weak transcription Fetal Muscle Leg muscle
11 chr1:214593400-214602400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr1:214593400-214612800 Weak transcription Ovary ovary
13 chr1:214594000-214618000 Weak transcription Stomach Smooth Muscle stomach
14 chr1:214595400-214601200 Weak transcription Esophagus oesophagus
15 chr1:214595400-214602400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr1:214595400-214612800 Weak transcription Aorta Aorta
17 chr1:214596000-214614000 Weak transcription Right Ventricle heart
18 chr1:214596400-214601200 Weak transcription A549 lung
19 chr1:214596600-214602400 Enhancers HMEC breast
20 chr1:214596600-214603400 Enhancers NHEK skin
21 chr1:214596800-214601000 Weak transcription iPS-15b Cell Line embryonic stem cell
22 chr1:214596800-214601200 Weak transcription H9 Cell Line embryonic stem cell
23 chr1:214596800-214601200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr1:214596800-214612800 Weak transcription Left Ventricle heart
25 chr1:214597000-214600800 Weak transcription HUES6 Cell Line embryonic stem cell
26 chr1:214597000-214601000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
27 chr1:214597000-214601000 Weak transcription HUES48 Cell Line embryonic stem cell
28 chr1:214597000-214601200 Weak transcription Psoas Muscle Psoas
29 chr1:214597200-214600800 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr1:214597200-214601200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr1:214597200-214604200 Weak transcription Placenta Amnion Placenta Amnion
32 chr1:214597600-214601200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr1:214598200-214600400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:214598200-214601000 Enhancers Muscle Satellite Cultured Cells --
35 chr1:214598200-214601600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
36 chr1:214598200-214601600 Enhancers Primary hematopoietic stem cells short term culture blood
37 chr1:214598200-214603400 Enhancers HSMM muscle
38 chr1:214598200-214603400 Enhancers Osteobl bone
39 chr1:214598400-214600400 Enhancers HSMMtube muscle
40 chr1:214598400-214601000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:214598400-214601000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr1:214598400-214601000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr1:214598400-214601200 Enhancers NHDF-Ad bronchial
44 chr1:214598400-214602600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr1:214598600-214600800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr1:214598600-214601000 Enhancers NH-A brain
47 chr1:214598600-214603800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
48 chr1:214598800-214602600 Enhancers Primary hematopoietic stem cells blood
49 chr1:214599000-214602800 Enhancers HUES64 Cell Line embryonic stem cell
50 chr1:214599000-214603600 Enhancers NHLF lung

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Last update: Aug 31, 2015