Variant report

Variant	rs4233300
Chromosome Location	chr1:214600783-214600784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs3935749	0.80[CHB][hapmap]
rs4253890	0.89[CEU][hapmap];0.86[CHB][hapmap]
rs6677050	0.89[CEU][hapmap];0.86[CHB][hapmap]

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214572600-214612600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:214576800-214612200	Weak transcription	Fetal Intestine Large	intestine
3	chr1:214581400-214601200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:214584200-214603000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:214591400-214612800	Weak transcription	Pancreas	Pancrea
6	chr1:214591600-214601200	Weak transcription	Gastric	stomach
7	chr1:214591600-214601400	Weak transcription	Lung	lung
8	chr1:214592000-214602200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:214593200-214613000	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:214593400-214602400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:214593400-214612800	Weak transcription	Ovary	ovary
12	chr1:214594000-214618000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr1:214595400-214601200	Weak transcription	Esophagus	oesophagus
14	chr1:214595400-214602400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:214595400-214612800	Weak transcription	Aorta	Aorta
16	chr1:214596000-214614000	Weak transcription	Right Ventricle	heart
17	chr1:214596400-214601200	Weak transcription	A549	lung
18	chr1:214596600-214602400	Enhancers	HMEC	breast
19	chr1:214596600-214603400	Enhancers	NHEK	skin
20	chr1:214596800-214601000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr1:214596800-214601200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr1:214596800-214601200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:214596800-214612800	Weak transcription	Left Ventricle	heart
24	chr1:214597000-214600800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr1:214597000-214601000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr1:214597000-214601000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr1:214597000-214601200	Weak transcription	Psoas Muscle	Psoas
28	chr1:214597200-214600800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr1:214597200-214601200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr1:214597200-214604200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr1:214597600-214601200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:214598200-214601000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr1:214598200-214601600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr1:214598200-214601600	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr1:214598200-214603400	Enhancers	HSMM	muscle
36	chr1:214598200-214603400	Enhancers	Osteobl	bone
37	chr1:214598400-214601000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr1:214598400-214601000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr1:214598400-214601000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr1:214598400-214601200	Enhancers	NHDF-Ad	bronchial
41	chr1:214598400-214602600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr1:214598600-214600800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:214598600-214601000	Enhancers	NH-A	brain
44	chr1:214598600-214603800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr1:214598800-214602600	Enhancers	Primary hematopoietic stem cells	blood
46	chr1:214599000-214602800	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr1:214599000-214603600	Enhancers	NHLF	lung
48	chr1:214599200-214600800	Enhancers	Dnd41	blood
49	chr1:214599200-214601200	Enhancers	Primary T cells from cord blood	blood
50	chr1:214599400-214601200	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links