Variant report

Variant	rs3935771
Chromosome Location	chr1:214724018-214724019
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:214724010..214724940-chr9:91925831..91926625,2	Hela-S3	cervix:
2	chr1:214656600..214658506-chr1:214723643..214725822,2	MCF-7	breast:
3	chr1:214503401..214505126-chr1:214723463..214724967,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123975	Chromatin interaction
ENSG00000143499	Chromatin interaction
ENSG00000213036	Chromatin interaction

rs_ID	r²[population]
rs11811925	1.00[AMR][1000 genomes]
rs17023173	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17042143	1.00[AMR][1000 genomes]

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214721000-214724200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:214721800-214725800	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr1:214722000-214724400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
4	chr1:214722200-214724200	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr1:214722200-214726000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:214722200-214726000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:214722400-214724200	Flanking Active TSS	Hela-S3	cervix
8	chr1:214722400-214725600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:214722400-214726000	Active TSS	Psoas Muscle	Psoas
10	chr1:214722400-214726000	Active TSS	HMEC	breast
11	chr1:214722600-214725400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:214722600-214726000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:214722600-214726000	Active TSS	NHDF-Ad	bronchial
14	chr1:214722600-214726200	Active TSS	Aorta	Aorta
15	chr1:214722800-214724400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:214722800-214725400	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr1:214722800-214726600	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr1:214723000-214724200	Flanking Active TSS	Fetal Muscle Leg	muscle
19	chr1:214723000-214724200	Flanking Active TSS	Placenta	Placenta
20	chr1:214723000-214725400	Active TSS	Osteobl	bone
21	chr1:214723000-214726000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr1:214723000-214726000	Active TSS	HSMM	muscle
23	chr1:214723000-214726200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr1:214723000-214726400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr1:214723200-214724600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr1:214723200-214725400	Active TSS	NHEK	skin
27	chr1:214723200-214725800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:214723200-214726000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr1:214723200-214726000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:214723200-214726000	Active TSS	NHLF	lung
31	chr1:214723200-214726200	Active TSS	Colonic Mucosa	Colon
32	chr1:214723200-214726200	Active TSS	Duodenum Mucosa	Duodenum
33	chr1:214723200-214726200	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
34	chr1:214723400-214724200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
35	chr1:214723400-214724200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
36	chr1:214723400-214724200	Active TSS	Right Atrium	heart
37	chr1:214723400-214724200	Flanking Active TSS	Stomach Mucosa	stomach
38	chr1:214723400-214724400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:214723400-214724600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr1:214723400-214725400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr1:214723400-214725400	Active TSS	Rectal Mucosa Donor 31	rectum
42	chr1:214723400-214725400	Active TSS	NH-A	brain
43	chr1:214723400-214725600	Active TSS	Gastric	stomach
44	chr1:214723400-214725600	Active TSS	HSMMtube	muscle
45	chr1:214723400-214725800	Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr1:214723400-214725800	Active TSS	Esophagus	oesophagus
47	chr1:214723400-214726000	Active TSS	Brain Cingulate Gyrus	brain
48	chr1:214723400-214726000	Active TSS	Ovary	ovary
49	chr1:214723400-214726000	Active TSS	Placenta Amnion	Placenta Amnion
50	chr1:214723400-214726200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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