Variant report

Variant	rs3936919
Chromosome Location	chr1:170414438-170414439
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10157476	0.93[AFR][1000 genomes]
rs10733056	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs10753810	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10753811	0.97[AFR][1000 genomes]
rs10753815	0.88[YRI][hapmap]
rs10800527	0.84[YRI][hapmap]
rs10919393	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10919425	0.82[AFR][1000 genomes]
rs12116909	0.86[YRI][hapmap];0.80[AFR][1000 genomes]
rs1333133	0.88[YRI][hapmap];0.80[AFR][1000 genomes]
rs1333142	0.82[YRI][hapmap]
rs1333146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1333151	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1333152	0.93[AFR][1000 genomes]
rs1333153	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1333154	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1333155	0.80[AFR][1000 genomes]
rs1333156	0.80[AFR][1000 genomes]
rs1412891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1412892	0.82[YRI][hapmap]
rs1412894	0.93[AFR][1000 genomes]
rs1412895	0.80[AFR][1000 genomes]
rs1537390	0.82[YRI][hapmap]
rs1537395	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1537397	0.88[YRI][hapmap]
rs1572026	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1572027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1576980	0.84[AFR][1000 genomes]
rs1831756	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1855221	0.80[AFR][1000 genomes]
rs1928716	0.84[YRI][hapmap]
rs1930632	0.87[YRI][hapmap]
rs1930633	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1930634	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2104918	0.81[AFR][1000 genomes]
rs2150029	0.88[YRI][hapmap]
rs2151333	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2225322	0.88[YRI][hapmap]
rs2421325	0.84[YRI][hapmap]
rs2901401	0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs4319388	0.88[AFR][1000 genomes]
rs4411178	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4436439	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4469769	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4656769	0.81[AFR][1000 genomes]
rs4656771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4656775	0.80[AFR][1000 genomes]
rs4656777	0.80[AFR][1000 genomes]
rs4656779	0.88[YRI][hapmap];0.82[AFR][1000 genomes]
rs6427255	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6427260	0.84[YRI][hapmap]
rs6427261	0.84[YRI][hapmap]
rs6660575	0.83[AFR][1000 genomes]
rs6664037	0.80[YRI][hapmap]
rs6667867	0.84[AFR][1000 genomes]
rs6669308	0.84[YRI][hapmap]
rs6670724	0.82[AFR][1000 genomes]
rs6670882	0.85[AFR][1000 genomes]
rs6671312	0.82[YRI][hapmap]
rs6693763	0.84[YRI][hapmap]
rs6698637	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6701004	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7531125	0.88[YRI][hapmap]
rs7538125	0.80[AFR][1000 genomes]
rs7553254	0.82[YRI][hapmap]
rs9651042	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170413000-170415600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:170413200-170415200	Enhancers	HSMM	muscle
3	chr1:170413200-170415400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:170413400-170415000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:170413600-170415000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:170413600-170415000	Enhancers	NHLF	lung
7	chr1:170413600-170415200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:170413600-170415400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:170413600-170415800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr1:170414000-170415000	Enhancers	HMEC	breast
11	chr1:170414000-170415200	Enhancers	Osteobl	bone
12	chr1:170414200-170415600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:170414400-170414600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:170414400-170415200	Enhancers	NHDF-Ad	bronchial

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