Variant report

Variant	rs9651042
Chromosome Location	chr1:170392179-170392180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10157476	0.92[AFR][1000 genomes]
rs10733056	0.81[AFR][1000 genomes]
rs10753810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10753811	0.98[AFR][1000 genomes]
rs10919393	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10919425	0.81[AFR][1000 genomes]
rs1333146	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1333151	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1333152	0.92[AFR][1000 genomes]
rs1333153	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1333154	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1412891	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1412894	0.92[AFR][1000 genomes]
rs1537395	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1572026	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1572027	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1576980	0.83[AFR][1000 genomes]
rs1831756	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1930633	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1930634	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2104918	0.80[AFR][1000 genomes]
rs2151333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2901401	0.81[AFR][1000 genomes]
rs3936919	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4319388	0.87[AFR][1000 genomes]
rs4411178	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4436439	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4469769	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4656769	0.82[AFR][1000 genomes]
rs4656771	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4656779	0.81[AFR][1000 genomes]
rs6427255	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6660575	0.82[AFR][1000 genomes]
rs6667867	0.85[AFR][1000 genomes]
rs6670724	0.81[AFR][1000 genomes]
rs6670882	0.84[AFR][1000 genomes]
rs6698637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6701004	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	esv2756870	chr1:170315081-170413292	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	esv2758977	chr1:170315081-170413292	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1000945	chr1:170367650-170401770	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170384800-170393400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:170384800-170395800	Weak transcription	Fetal Heart	heart
3	chr1:170386600-170393200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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