Variant report

Variant	rs394148
Chromosome Location	chr13:86396921-86396922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1169350	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1169362	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1337271	1.00[ASN][1000 genomes]
rs17080147	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs528773	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56081132	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61968878	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86396600-86397000	Enhancers	NHEK	skin
2	chr13:86396800-86397000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:86396800-86397200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links