Variant report

Variant	rs17080147
Chromosome Location	chr13:86369403-86369404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1337271	1.00[ASN][1000 genomes]
rs394148	1.00[ASN][1000 genomes]
rs7998922	0.94[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86335000-86372800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:86362400-86371000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr13:86366400-86370600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:86366600-86369600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:86366800-86370200	Weak transcription	Fetal Intestine Large	intestine
6	chr13:86367000-86372200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr13:86367200-86370800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr13:86367200-86371200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:86368200-86370000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr13:86368800-86371400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr13:86369200-86369600	Strong transcription	Fetal Lung	lung
12	chr13:86369200-86369800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr13:86369200-86370000	Enhancers	Fetal Stomach	stomach
14	chr13:86369400-86370000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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