Variant report

Variant	rs7998922
Chromosome Location	chr13:86367010-86367011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10450864	0.81[EUR][1000 genomes]
rs11841292	0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs1337269	0.84[ASN][1000 genomes]
rs1576453	0.80[ASN][1000 genomes]
rs1576454	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17080128	0.85[ASN][1000 genomes]
rs17080147	0.94[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs2149266	0.84[ASN][1000 genomes]
rs2225857	0.81[ASN][1000 genomes]
rs6563459	0.87[ASN][1000 genomes]
rs7318134	0.81[EUR][1000 genomes]
rs73541869	0.81[EUR][1000 genomes]
rs73541886	0.81[EUR][1000 genomes]
rs73545703	0.81[EUR][1000 genomes]
rs74102126	0.81[EUR][1000 genomes]
rs7998343	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86335000-86372800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:86354200-86368200	Weak transcription	Fetal Lung	lung
3	chr13:86360000-86368200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:86362400-86371000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr13:86366400-86370600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:86366600-86369200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr13:86366600-86369600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr13:86366800-86370200	Weak transcription	Fetal Intestine Large	intestine
9	chr13:86367000-86372200	Weak transcription	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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