Variant report

Variant	rs1576453
Chromosome Location	chr13:86428283-86428284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10450864	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11841292	0.84[EUR][1000 genomes]
rs1536938	0.89[ASN][1000 genomes]
rs1536939	0.89[ASN][1000 genomes]
rs1536940	0.89[ASN][1000 genomes]
rs1576454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35836132	0.89[ASN][1000 genomes]
rs4343164	0.89[ASN][1000 genomes]
rs4402443	0.81[EUR][1000 genomes]
rs4432164	0.81[EUR][1000 genomes]
rs55654951	0.80[ASN][1000 genomes]
rs55747338	0.92[ASN][1000 genomes]
rs55859513	0.89[ASN][1000 genomes]
rs55997274	0.89[ASN][1000 genomes]
rs56065131	0.92[ASN][1000 genomes]
rs56119324	0.89[ASN][1000 genomes]
rs56161550	0.89[ASN][1000 genomes]
rs56169913	0.92[ASN][1000 genomes]
rs56329071	0.89[ASN][1000 genomes]
rs57018101	0.81[EUR][1000 genomes]
rs61968880	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs61969497	0.89[ASN][1000 genomes]
rs61969498	0.89[ASN][1000 genomes]
rs61969499	0.89[ASN][1000 genomes]
rs61969502	0.89[ASN][1000 genomes]
rs61969505	0.89[ASN][1000 genomes]
rs61969506	0.89[ASN][1000 genomes]
rs61969509	0.89[ASN][1000 genomes]
rs61969510	0.89[ASN][1000 genomes]
rs61969513	0.89[ASN][1000 genomes]
rs61969514	0.89[ASN][1000 genomes]
rs61969516	0.89[ASN][1000 genomes]
rs72632719	0.92[ASN][1000 genomes]
rs72632722	0.92[ASN][1000 genomes]
rs72632732	0.92[ASN][1000 genomes]
rs7318134	0.84[EUR][1000 genomes]
rs73541869	0.84[EUR][1000 genomes]
rs73541886	0.84[EUR][1000 genomes]
rs73545703	0.84[EUR][1000 genomes]
rs74102126	0.97[EUR][1000 genomes]
rs7990625	0.81[EUR][1000 genomes]
rs7998102	0.81[EUR][1000 genomes]
rs7998674	0.81[EUR][1000 genomes]
rs7998922	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900734	chr13:86415632-86911159	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900735	chr13:86426757-86545903	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86427200-86428600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:86427400-86428800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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