Variant report
| Variant | rs56169913 |
|---|---|
| Chromosome Location | chr13:86427156-86427157 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1536938 | 0.92[ASN][1000 genomes] |
| rs1536939 | 0.92[ASN][1000 genomes] |
| rs1536940 | 0.92[ASN][1000 genomes] |
| rs1576453 | 0.92[ASN][1000 genomes] |
| rs1576454 | 0.92[ASN][1000 genomes] |
| rs35836132 | 0.92[ASN][1000 genomes] |
| rs4343164 | 0.92[ASN][1000 genomes] |
| rs55654951 | 0.84[ASN][1000 genomes] |
| rs55747338 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55859513 | 0.92[ASN][1000 genomes] |
| rs55997274 | 0.92[ASN][1000 genomes] |
| rs56065131 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56119324 | 0.92[ASN][1000 genomes] |
| rs56161550 | 0.92[ASN][1000 genomes] |
| rs56229215 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs56329071 | 0.92[ASN][1000 genomes] |
| rs61968880 | 0.86[ASN][1000 genomes] |
| rs61969497 | 0.92[ASN][1000 genomes] |
| rs61969498 | 0.92[ASN][1000 genomes] |
| rs61969499 | 0.92[ASN][1000 genomes] |
| rs61969502 | 0.92[ASN][1000 genomes] |
| rs61969505 | 0.92[ASN][1000 genomes] |
| rs61969506 | 0.92[ASN][1000 genomes] |
| rs61969509 | 0.92[ASN][1000 genomes] |
| rs61969510 | 0.92[ASN][1000 genomes] |
| rs61969513 | 0.92[ASN][1000 genomes] |
| rs61969514 | 0.92[ASN][1000 genomes] |
| rs61969516 | 0.92[ASN][1000 genomes] |
| rs72632719 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72632722 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72632732 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv900734 | chr13:86415632-86911159 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv900735 | chr13:86426757-86545903 | Enhancers ZNF genes & repeats Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:86424000-86427400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr13:86425600-86427200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
