Variant report

Variant	rs56229215
Chromosome Location	chr13:86397630-86397631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs55747338	0.81[EUR][1000 genomes]
rs55781407	1.00[AFR][1000 genomes]
rs55800255	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs55872307	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55887208	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56065131	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56169913	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61968664	1.00[ASN][1000 genomes]
rs61969512	1.00[AFR][1000 genomes]
rs61971072	1.00[AFR][1000 genomes]
rs7139722	1.00[ASN][1000 genomes]
rs72631094	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632708	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72632710	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72632713	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632715	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72632717	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72632719	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72632722	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72632726	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632729	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632732	0.81[EUR][1000 genomes]
rs72632734	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002082	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9531823	1.00[ASN][1000 genomes]
rs9531829	1.00[ASN][1000 genomes]
rs9531837	1.00[ASN][1000 genomes]
rs9531839	1.00[ASN][1000 genomes]
rs9547298	1.00[ASN][1000 genomes]
rs9547321	1.00[ASN][1000 genomes]
rs9547340	1.00[ASN][1000 genomes]
rs9547342	1.00[ASN][1000 genomes]
rs9547347	1.00[ASN][1000 genomes]
rs9547351	1.00[ASN][1000 genomes]
rs9547362	1.00[ASN][1000 genomes]
rs9547369	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9547372	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9547374	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9602858	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86397600-86398400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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