Variant report

Variant	rs72632729
Chromosome Location	chr13:86427744-86427745
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs55781407	1.00[AFR][1000 genomes]
rs55800255	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55872307	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55887208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56229215	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61968664	1.00[ASN][1000 genomes]
rs61969512	1.00[AFR][1000 genomes]
rs61971072	1.00[AFR][1000 genomes]
rs7139722	1.00[ASN][1000 genomes]
rs72631094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632708	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72632710	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72632713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632715	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72632717	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72632726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7325879	0.81[EUR][1000 genomes]
rs8002082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9531823	1.00[ASN][1000 genomes]
rs9531829	1.00[ASN][1000 genomes]
rs9531837	1.00[ASN][1000 genomes]
rs9531839	1.00[ASN][1000 genomes]
rs9531840	0.81[EUR][1000 genomes]
rs9547321	1.00[ASN][1000 genomes]
rs9547340	1.00[ASN][1000 genomes]
rs9547342	1.00[ASN][1000 genomes]
rs9547347	1.00[ASN][1000 genomes]
rs9547351	1.00[ASN][1000 genomes]
rs9547362	1.00[ASN][1000 genomes]
rs9547369	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547370	0.81[EUR][1000 genomes]
rs9547372	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547374	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9602858	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900734	chr13:86415632-86911159	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900735	chr13:86426757-86545903	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86427200-86428600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:86427400-86428800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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