Variant report

Variant	rs9547369
Chromosome Location	chr13:86339455-86339456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs34227361	1.00[ASN][1000 genomes]
rs55872307	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55887208	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56229215	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61968664	1.00[ASN][1000 genomes]
rs7139722	1.00[ASN][1000 genomes]
rs72631094	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632708	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72632710	0.86[AMR][1000 genomes]
rs72632713	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632715	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72632717	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72632726	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632729	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632734	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7325879	1.00[EUR][1000 genomes]
rs8002082	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9531823	1.00[ASN][1000 genomes]
rs9531829	1.00[ASN][1000 genomes]
rs9531837	1.00[ASN][1000 genomes]
rs9531839	1.00[ASN][1000 genomes]
rs9531840	1.00[EUR][1000 genomes]
rs9547298	1.00[ASN][1000 genomes]
rs9547321	1.00[ASN][1000 genomes]
rs9547340	1.00[ASN][1000 genomes]
rs9547342	1.00[ASN][1000 genomes]
rs9547347	1.00[ASN][1000 genomes]
rs9547351	1.00[ASN][1000 genomes]
rs9547362	1.00[ASN][1000 genomes]
rs9547370	1.00[EUR][1000 genomes]
rs9547372	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9602858	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832668	chr13:86234885-86364254	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1044417	chr13:86239152-86344862	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86335000-86372800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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