Variant report

Variant	rs9602858
Chromosome Location	chr13:86439593-86439594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12017067	0.81[AFR][1000 genomes]
rs12018247	0.87[AFR][1000 genomes]
rs55800255	0.91[EUR][1000 genomes]
rs55872307	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55887208	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56229215	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61968664	1.00[ASN][1000 genomes]
rs7139722	1.00[ASN][1000 genomes]
rs72631094	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632708	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72632710	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72632713	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632715	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72632717	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72632726	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632729	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632734	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7325879	0.81[EUR][1000 genomes]
rs74102129	0.84[AFR][1000 genomes]
rs8002082	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9531823	1.00[ASN][1000 genomes]
rs9531829	1.00[ASN][1000 genomes]
rs9531837	1.00[ASN][1000 genomes]
rs9531839	1.00[ASN][1000 genomes]
rs9531840	0.81[EUR][1000 genomes]
rs9547321	1.00[ASN][1000 genomes]
rs9547340	1.00[ASN][1000 genomes]
rs9547342	1.00[ASN][1000 genomes]
rs9547347	1.00[ASN][1000 genomes]
rs9547351	1.00[ASN][1000 genomes]
rs9547362	1.00[ASN][1000 genomes]
rs9547369	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547370	0.81[EUR][1000 genomes]
rs9547372	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547374	1.00[ASN][1000 genomes]
rs9594058	0.87[AFR][1000 genomes]
rs9602852	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900734	chr13:86415632-86911159	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900735	chr13:86426757-86545903	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900736	chr13:86429834-86529275	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900737	chr13:86429834-86639464	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86439200-86439800	Enhancers	HMEC	breast
2	chr13:86439200-86440000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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