Variant report

Variant	rs9594058
Chromosome Location	chr13:86427706-86427707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12017067	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12018247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60609565	0.86[AFR][1000 genomes]
rs74102129	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102144	0.83[AMR][1000 genomes]
rs9602852	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9602858	0.87[AFR][1000 genomes]
rs9602873	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9602875	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9602906	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900734	chr13:86415632-86911159	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900735	chr13:86426757-86545903	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86427200-86428600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:86427400-86428800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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