Variant report
| Variant | rs9547374 |
|---|---|
| Chromosome Location | chr13:86357372-86357373 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:86347061..86348731-chr13:86356799..86359631,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs34227361 | 1.00[ASN][1000 genomes] |
| rs55872307 | 0.86[AMR][1000 genomes] |
| rs55887208 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56229215 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61968664 | 1.00[ASN][1000 genomes] |
| rs7139722 | 1.00[ASN][1000 genomes] |
| rs72631094 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72632708 | 0.86[AMR][1000 genomes] |
| rs72632710 | 0.86[AMR][1000 genomes] |
| rs72632713 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72632715 | 0.86[AMR][1000 genomes] |
| rs72632717 | 0.86[AMR][1000 genomes] |
| rs72632726 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72632729 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72632734 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7325879 | 0.96[EUR][1000 genomes] |
| rs8002082 | 0.89[AMR][1000 genomes] |
| rs9531823 | 1.00[ASN][1000 genomes] |
| rs9531829 | 1.00[ASN][1000 genomes] |
| rs9531837 | 1.00[ASN][1000 genomes] |
| rs9531839 | 1.00[ASN][1000 genomes] |
| rs9531840 | 0.96[EUR][1000 genomes] |
| rs9547298 | 1.00[ASN][1000 genomes] |
| rs9547321 | 1.00[ASN][1000 genomes] |
| rs9547340 | 1.00[ASN][1000 genomes] |
| rs9547342 | 1.00[ASN][1000 genomes] |
| rs9547347 | 1.00[ASN][1000 genomes] |
| rs9547351 | 1.00[ASN][1000 genomes] |
| rs9547362 | 1.00[ASN][1000 genomes] |
| rs9547369 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9547370 | 0.96[EUR][1000 genomes] |
| rs9547372 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9602858 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1037563 | chr13:85830511-86414012 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv832668 | chr13:86234885-86364254 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:86335000-86372800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr13:86354200-86368200 | Weak transcription | Fetal Lung | lung |
| 3 | chr13:86356800-86366400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
