Variant report

Variant	rs9547370
Chromosome Location	chr13:86346271-86346272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17080147	1.00[JPT][hapmap]
rs55872307	0.81[EUR][1000 genomes]
rs72631094	0.81[EUR][1000 genomes]
rs72632708	0.81[EUR][1000 genomes]
rs72632713	0.81[EUR][1000 genomes]
rs72632715	0.81[EUR][1000 genomes]
rs72632717	0.81[EUR][1000 genomes]
rs72632726	0.81[EUR][1000 genomes]
rs72632729	0.81[EUR][1000 genomes]
rs72632734	0.81[EUR][1000 genomes]
rs7325879	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002082	0.81[EUR][1000 genomes]
rs9531840	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547369	1.00[EUR][1000 genomes]
rs9547372	1.00[EUR][1000 genomes]
rs9547374	0.96[EUR][1000 genomes]
rs9602858	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832668	chr13:86234885-86364254	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86335000-86372800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:86345800-86347600	Enhancers	Hela-S3	cervix
3	chr13:86346000-86346800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:86346000-86346800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:86346200-86346800	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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