Variant report

Variant	rs7990625
Chromosome Location	chr13:86549493-86549494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10450864	0.84[EUR][1000 genomes]
rs10507955	1.00[ASN][1000 genomes]
rs11841292	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576453	0.81[EUR][1000 genomes]
rs1576454	0.84[EUR][1000 genomes]
rs4402443	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4432164	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57018101	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318134	1.00[CEU][hapmap];0.82[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7322731	0.86[ASN][1000 genomes]
rs7323214	0.86[ASN][1000 genomes]
rs7323299	0.86[ASN][1000 genomes]
rs7329157	1.00[ASN][1000 genomes]
rs7330120	1.00[ASN][1000 genomes]
rs7334068	1.00[CHB][hapmap]
rs73541869	0.97[EUR][1000 genomes]
rs73541886	0.97[EUR][1000 genomes]
rs73541889	0.90[EUR][1000 genomes]
rs73545703	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74102126	0.84[EUR][1000 genomes]
rs7982442	0.95[ASN][1000 genomes]
rs7998102	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7998643	1.00[ASN][1000 genomes]
rs7998674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999876	0.86[ASN][1000 genomes]
rs9594085	1.00[ASN][1000 genomes]
rs9602932	1.00[ASN][1000 genomes]
rs9602933	1.00[ASN][1000 genomes]
rs9602935	1.00[ASN][1000 genomes]
rs9602936	0.95[ASN][1000 genomes]
rs9602941	0.95[ASN][1000 genomes]
rs9602944	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900734	chr13:86415632-86911159	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900737	chr13:86429834-86639464	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv456053	chr13:86448054-86551371	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv562610	chr13:86448054-86551371	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900738	chr13:86449302-86628241	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv900739	chr13:86449302-86736910	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv900740	chr13:86449302-86911159	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv900741	chr13:86461429-86959695	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv524758	chr13:86463135-86568584	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv900742	chr13:86463135-86618098	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv900743	chr13:86477773-86581867	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv900746	chr13:86498444-86618098	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv562611	chr13:86521995-86570412	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv900749	chr13:86529275-86628241	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv900750	chr13:86529275-86740599	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv900751	chr13:86533687-86605288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1035427	chr13:86539848-86588087	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv456054	chr13:86542148-86575869	Enhancers Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv562612	chr13:86542148-86575869	Enhancers Active TSS Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv832669	chr13:86543824-86697234	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv900752	chr13:86545903-86949574	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86548000-86549600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr13:86548600-86549600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:86548600-86549600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:86548600-86549600	Enhancers	Hela-S3	cervix
5	chr13:86548600-86550200	Enhancers	Fetal Heart	heart
6	chr13:86549200-86549600	Active TSS	Right Atrium	heart

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