Variant report

Variant	rs10450864
Chromosome Location	chr13:86474238-86474239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11841292	0.87[EUR][1000 genomes]
rs1576453	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1576454	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4402443	0.84[EUR][1000 genomes]
rs4432164	0.84[EUR][1000 genomes]
rs55659080	0.86[ASN][1000 genomes]
rs55865303	0.86[ASN][1000 genomes]
rs55980796	0.86[ASN][1000 genomes]
rs56313870	0.86[ASN][1000 genomes]
rs57018101	0.84[EUR][1000 genomes]
rs61968880	0.86[AFR][1000 genomes]
rs61969481	0.86[ASN][1000 genomes]
rs61969503	0.86[ASN][1000 genomes]
rs61969511	0.86[ASN][1000 genomes]
rs61969522	0.86[ASN][1000 genomes]
rs61969525	0.93[ASN][1000 genomes]
rs61969530	0.96[ASN][1000 genomes]
rs61969532	0.93[ASN][1000 genomes]
rs61969536	0.85[ASN][1000 genomes]
rs61971063	0.81[ASN][1000 genomes]
rs61971066	0.86[ASN][1000 genomes]
rs61971074	0.82[ASN][1000 genomes]
rs61971075	0.86[ASN][1000 genomes]
rs61971076	0.86[ASN][1000 genomes]
rs61971078	0.86[ASN][1000 genomes]
rs6563459	0.85[CHB][hapmap]
rs72632783	0.82[ASN][1000 genomes]
rs72632788	0.86[ASN][1000 genomes]
rs72632789	0.86[ASN][1000 genomes]
rs72632794	0.86[ASN][1000 genomes]
rs72632795	0.86[ASN][1000 genomes]
rs72632797	0.86[ASN][1000 genomes]
rs72632799	0.93[ASN][1000 genomes]
rs7318134	0.87[EUR][1000 genomes]
rs73541869	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73541886	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73541889	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73545703	0.87[EUR][1000 genomes]
rs74102126	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7990625	0.84[EUR][1000 genomes]
rs7998102	0.84[EUR][1000 genomes]
rs7998674	0.84[EUR][1000 genomes]
rs7998922	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900734	chr13:86415632-86911159	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900735	chr13:86426757-86545903	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900736	chr13:86429834-86529275	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900737	chr13:86429834-86639464	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv456053	chr13:86448054-86551371	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv562610	chr13:86448054-86551371	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1050020	chr13:86449037-86499673	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv900738	chr13:86449302-86628241	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv900739	chr13:86449302-86736910	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv900740	chr13:86449302-86911159	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv900741	chr13:86461429-86959695	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv524758	chr13:86463135-86568584	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv900742	chr13:86463135-86618098	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86474200-86475000	Enhancers	Liver	Liver

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