Variant report

Variant	rs394720
Chromosome Location	chr8:90163419-90163420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1240068	0.83[AMR][1000 genomes]
rs1240074	1.00[AMR][1000 genomes]
rs1240079	1.00[AMR][1000 genomes]
rs1261651	0.83[AMR][1000 genomes]
rs167611	0.92[AFR][1000 genomes]
rs318245	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318250	0.92[AFR][1000 genomes]
rs318252	0.84[AFR][1000 genomes]
rs318293	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs318308	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318323	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv891177	chr8:89941889-90166429	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1016875	chr8:90121459-90175887	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2753596	chr8:90134084-90196984	Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2756488	chr8:90143731-90202984	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1034759	chr8:90152834-90252502	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv2761446	chr8:90158102-90202984	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90163000-90163600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:90163400-90163800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr8:90163400-90163800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:90163400-90164000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:90163400-90164000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:90163400-90164200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:90163400-90164200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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