Variant report

Variant	rs3948765
Chromosome Location	chr1:172432214-172432215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172422534..172424842-chr1:172429005..172432418,3	K562	blood:
2	chr1:172428539..172433124-chr1:172502239..172505220,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1129942	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2001130	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2001132	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2018244	0.92[AMR][1000 genomes]
rs2213738	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2901655	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4244193	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4244194	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4916187	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4916260	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4916261	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6659116	0.89[EUR][1000 genomes]
rs6660798	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6689291	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs739249	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7515895	0.89[EUR][1000 genomes]
rs7518300	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7522692	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7538417	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7544376	0.89[EUR][1000 genomes]
rs9425328	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425330	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425620	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172422600-172435400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172423400-172434600	Weak transcription	HSMMtube	muscle
3	chr1:172425800-172435400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:172426000-172436000	Weak transcription	Fetal Intestine Large	intestine
5	chr1:172426400-172434600	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:172430200-172435400	Weak transcription	HepG2	liver
7	chr1:172430400-172435200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:172430400-172435400	Weak transcription	HMEC	breast
9	chr1:172430600-172435200	Weak transcription	NHEK	skin
10	chr1:172430600-172436000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:172431200-172435000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:172431200-172435400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:172431600-172435400	Weak transcription	A549	lung
14	chr1:172432000-172432800	Enhancers	Primary neutrophils fromperipheralblood	blood

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