Variant report

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172426591..172429561-chr1:172505407..172507168,2	K562	blood:
2	chr1:172420977..172423750-chr1:172424535..172427045,4	MCF-7	breast:
3	chr1:172424577..172428179-chr1:172432936..172436008,3	K562	blood:
4	chr1:172425636..172427358-chr1:172429662..172431249,2	MCF-7	breast:
5	chr1:172407688..172409454-chr1:172424821..172426933,2	K562	blood:
6	chr1:172425095..172427672-chr1:172501670..172503756,3	MCF-7	breast:
7	chr1:172424806..172427327-chr1:172442354..172444546,2	K562	blood:
8	chr1:172424634..172428782-chr1:172501344..172503706,6	K562	blood:
9	chr1:172426679..172428842-chr1:172434307..172436008,2	K562	blood:
10	chr1:172424634..172427242-chr1:172501773..172503661,2	K562	blood:
11	chr1:172418680..172423994-chr1:172424179..172427425,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction
ENSG00000180999	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1129942	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2001130	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2001132	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2018244	0.89[AMR][1000 genomes]
rs2213738	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2901655	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3948765	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4244193	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4244194	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4916187	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4916260	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4916261	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6659116	0.89[EUR][1000 genomes]
rs6660798	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs739249	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7515895	0.90[EUR][1000 genomes]
rs7518300	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7522692	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7538417	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7544376	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9425328	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9425330	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9425620	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172422600-172435400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172423200-172429000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:172423200-172429200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:172423400-172434600	Weak transcription	HSMMtube	muscle
5	chr1:172423600-172432000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr1:172425800-172435400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:172426000-172436000	Weak transcription	Fetal Intestine Large	intestine
8	chr1:172426400-172427200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:172426400-172427200	Enhancers	K562	blood
10	chr1:172426400-172428200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr1:172426400-172434600	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:172426600-172427000	Enhancers	Adipose Nuclei	Adipose
13	chr1:172426600-172427000	Enhancers	HepG2	liver
14	chr1:172426800-172427200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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