Variant report

Variant	rs3955482
Chromosome Location	chr8:124834019-124834020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124832995..124835847-chr8:124852193..124854315,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10089283	0.82[ASN][1000 genomes]
rs10106428	0.82[ASN][1000 genomes]
rs10505442	0.82[ASN][1000 genomes]
rs11987328	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11991217	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11997795	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11998231	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1367826	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16898889	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2272684	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28412991	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28490169	0.80[AMR][1000 genomes]
rs28589482	0.82[ASN][1000 genomes]
rs28701862	0.82[ASN][1000 genomes]
rs3889940	0.82[ASN][1000 genomes]
rs3889941	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67260918	0.82[ASN][1000 genomes]
rs72713165	0.82[ASN][1000 genomes]
rs72715027	0.82[ASN][1000 genomes]
rs72715028	0.82[ASN][1000 genomes]
rs72715029	0.82[ASN][1000 genomes]
rs72715030	0.82[ASN][1000 genomes]
rs72715031	0.82[ASN][1000 genomes]
rs72715032	0.82[ASN][1000 genomes]
rs72715037	0.82[ASN][1000 genomes]
rs72715039	0.82[ASN][1000 genomes]
rs72715041	0.82[ASN][1000 genomes]
rs72715042	0.82[ASN][1000 genomes]
rs72715045	0.82[ASN][1000 genomes]
rs72715049	0.82[ASN][1000 genomes]
rs72715051	0.82[ASN][1000 genomes]
rs72715053	0.82[ASN][1000 genomes]
rs72715055	0.82[ASN][1000 genomes]
rs72715056	0.82[ASN][1000 genomes]
rs72715057	0.82[ASN][1000 genomes]
rs72715061	0.82[ASN][1000 genomes]
rs72715064	0.82[ASN][1000 genomes]
rs72715069	0.82[ASN][1000 genomes]
rs9297677	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124813400-124837600	Weak transcription	Brain Substantia Nigra	brain
2	chr8:124814800-124837400	Weak transcription	Brain Hippocampus Middle	brain
3	chr8:124819600-124836800	Weak transcription	Fetal Heart	heart
4	chr8:124820600-124837600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:124823000-124835400	Weak transcription	A549	lung
6	chr8:124823000-124836000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:124823200-124838000	Weak transcription	Right Ventricle	heart
8	chr8:124824000-124837800	Weak transcription	Brain Angular Gyrus	brain
9	chr8:124824200-124835400	Weak transcription	Brain Anterior Caudate	brain
10	chr8:124824200-124836600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr8:124824400-124834200	Weak transcription	Fetal Intestine Small	intestine
12	chr8:124824400-124838000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr8:124825200-124835600	Weak transcription	Placenta	Placenta
14	chr8:124825200-124836000	Weak transcription	Fetal Intestine Large	intestine
15	chr8:124825200-124837000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr8:124825200-124837600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:124827000-124835400	Weak transcription	HUVEC	blood vessel
18	chr8:124828200-124836800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr8:124828600-124835600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:124828600-124835800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr8:124828600-124836400	Weak transcription	Fetal Muscle Leg	muscle
22	chr8:124828800-124837600	Weak transcription	Left Ventricle	heart
23	chr8:124829400-124845000	Weak transcription	NHLF	lung
24	chr8:124829800-124844000	Weak transcription	Fetal Lung	lung
25	chr8:124830000-124835600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:124830000-124835800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:124830600-124835600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr8:124831800-124835600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:124831800-124836200	Weak transcription	Ovary	ovary
30	chr8:124832000-124834800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr8:124832200-124835600	Weak transcription	Fetal Stomach	stomach

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