The 2.0 version of rSNPBase

Variant report

Variant rs396116
Chromosome Location chr19:44494583-44494584
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:44489200-44494600 Weak transcription Gastric stomach
2 chr19:44489200-44494600 Weak transcription NHLF lung
3 chr19:44489200-44496000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr19:44489200-44496000 Weak transcription HUES48 Cell Line embryonic stem cell
5 chr19:44489200-44496000 Weak transcription Small Intestine intestine
6 chr19:44489200-44496600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr19:44489200-44500400 Weak transcription HUVEC blood vessel
8 chr19:44489200-44506200 Weak transcription iPS-15b Cell Line embryonic stem cell
9 chr19:44489200-44506200 Weak transcription Hela-S3 cervix
10 chr19:44489400-44495600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr19:44489400-44496600 Weak transcription H9 Cell Line embryonic stem cell
12 chr19:44489600-44494600 Weak transcription Primary T killer memory cells from peripheral blood blood
13 chr19:44489600-44494800 Weak transcription Fetal Intestine Small intestine
14 chr19:44489600-44495600 Weak transcription H1 Cell Line embryonic stem cell
15 chr19:44489600-44496000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr19:44489600-44496200 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr19:44489600-44506200 Weak transcription HepG2 liver
18 chr19:44490000-44494800 Weak transcription Spleen Spleen
19 chr19:44490400-44494600 Weak transcription Fetal Heart heart
20 chr19:44491000-44500200 Strong transcription Fetal Lung lung
21 chr19:44491000-44501600 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
22 chr19:44491000-44503400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr19:44491000-44503800 ZNF genes & repeats Liver Liver
24 chr19:44491400-44503400 ZNF genes & repeats Primary hematopoietic stem cells blood
25 chr19:44491600-44500000 Strong transcription Primary T cells from cord blood blood
26 chr19:44491600-44501800 Strong transcription Brain Hippocampus Middle brain
27 chr19:44491800-44502200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr19:44492000-44502000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr19:44492200-44499600 Strong transcription Primary T killer naive cells fromperipheralblood blood
30 chr19:44492200-44500200 Strong transcription Rectal Mucosa Donor 29 rectum
31 chr19:44492200-44500400 Strong transcription Primary T helper cells fromperipheralblood blood
32 chr19:44492200-44501400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr19:44492400-44494600 Strong transcription Monocytes-CD14+_RO01746 blood
34 chr19:44492400-44495400 ZNF genes & repeats A549 lung
35 chr19:44492400-44497400 Strong transcription Rectal Smooth Muscle rectum
36 chr19:44492400-44499200 Strong transcription Brain Inferior Temporal Lobe brain
37 chr19:44492400-44501000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr19:44492400-44501400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr19:44492400-44501400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
40 chr19:44492400-44501800 Strong transcription Primary T cells fromperipheralblood blood
41 chr19:44492400-44501800 Strong transcription Brain Cingulate Gyrus brain
42 chr19:44492400-44502000 Strong transcription Fetal Adrenal Gland Adrenal Gland
43 chr19:44492400-44502200 Strong transcription Fetal Intestine Large intestine
44 chr19:44492400-44502200 Strong transcription HSMM muscle
45 chr19:44492400-44502400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
46 chr19:44492400-44502400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
47 chr19:44492400-44502600 Strong transcription Fetal Muscle Trunk muscle
48 chr19:44492600-44496000 Strong transcription Adipose Nuclei Adipose
49 chr19:44492600-44496000 Strong transcription Duodenum Mucosa Duodenum
50 chr19:44492600-44496200 Strong transcription Psoas Muscle Psoas

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Last update: Aug 31, 2015