Variant report

Variant	rs396553
Chromosome Location	chr4:85304578-85304579
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs364617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs368409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs369724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs370171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs381958	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs386495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs387890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs393805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs396135	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs396539	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs400792	1.00[AFR][1000 genomes]
rs403004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs403938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs405856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs406332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs407299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs411578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs416013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs420058	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs422447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs425367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs430140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs430672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs430830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs435676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4358393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs435961	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs440976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs441409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs443900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs616419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs618357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85302600-85305200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:85302800-85304600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
3	chr4:85303000-85306000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:85303400-85305800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:85303600-85305800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:85304000-85305800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:85304000-85306600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:85304200-85305600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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