Variant report

Variant	rs440976
Chromosome Location	chr4:85306525-85306526
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85305672..85308432-chr4:85311390..85313175,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs364617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs368409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs369724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs370171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs381958	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs386495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs387890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs393805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs396135	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs396539	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs396553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs400792	1.00[AFR][1000 genomes]
rs403004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs403938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs405856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs406332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs407299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs411578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs416013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs420058	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs422447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs425367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs430140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs430672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs430830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs435676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4358393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs435961	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs441409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs443900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs616419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs618357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85304000-85306600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:85304600-85307200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:85305200-85306600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr4:85305200-85307000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:85305400-85306600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr4:85305400-85307000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:85305400-85307200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:85305600-85307200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:85305600-85307600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:85305800-85306600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:85305800-85306800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr4:85305800-85307200	Enhancers	Fetal Stomach	stomach
13	chr4:85305800-85308000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:85306000-85306600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr4:85306000-85307000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr4:85306000-85307400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr4:85306200-85307400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:85306400-85307800	Enhancers	Pancreatic Islets	Pancreatic Islet

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