Variant report

Variant	rs3972362
Chromosome Location	chr4:97963735-97963736
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10011707	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10031498	0.86[ASN][1000 genomes]
rs1013968	0.80[ASN][1000 genomes]
rs1018952	0.87[ASN][1000 genomes]
rs11932741	0.87[ASN][1000 genomes]
rs13140973	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1859325	0.80[ASN][1000 genomes]
rs2189576	0.86[ASN][1000 genomes]
rs2214553	0.87[ASN][1000 genomes]
rs2865773	0.87[ASN][1000 genomes]
rs35461800	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4141303	0.82[ASN][1000 genomes]
rs4541511	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4627872	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7681058	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1005103	chr4:97914293-98011695	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97959400-97963800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:97959400-97965600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:97959800-97964000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:97960000-97966000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links