Variant report

Variant	rs4541511
Chromosome Location	chr4:97962849-97962850
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10006108	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10011707	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10031498	0.95[ASN][1000 genomes]
rs1013968	0.89[ASN][1000 genomes]
rs1018952	0.96[ASN][1000 genomes]
rs11932741	0.96[ASN][1000 genomes]
rs13140973	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859325	0.89[ASN][1000 genomes]
rs2189576	0.95[ASN][1000 genomes]
rs2214553	0.96[ASN][1000 genomes]
rs2865773	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs35461800	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3972362	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4141303	0.91[ASN][1000 genomes]
rs4627872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681058	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1005103	chr4:97914293-98011695	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97959400-97963800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:97959400-97965600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:97959800-97964000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:97960000-97966000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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