Variant report

Variant	rs397248
Chromosome Location	chrX:91536873-91536874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs372786	0.92[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.87[MKK][hapmap];0.81[YRI][hapmap]
rs372789	0.87[CEU][hapmap];0.91[TSI][hapmap]
rs380450	1.00[JPT][hapmap]
rs394756	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs416433	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[TSI][hapmap]
rs417939	1.00[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap]
rs423563	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs438108	0.91[TSI][hapmap]
rs439972	0.94[CEU][hapmap];0.86[TSI][hapmap]
rs448170	0.86[CEU][hapmap]
rs471363	0.88[CEU][hapmap];0.91[TSI][hapmap]
rs6618951	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432350	chrX:91158935-91590765	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3435339	chrX:91427773-91539017	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv532885	chrX:91428554-92377178	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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