Variant report

Variant	rs438108
Chromosome Location	chrX:91527166-91527167
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs372789	0.88[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs397248	0.91[TSI][hapmap]
rs416433	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs423563	0.81[CEU][hapmap]
rs439972	0.83[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs440205	0.89[MEX][hapmap]
rs448170	0.87[CEU][hapmap]
rs471363	0.88[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap]
rs5984169	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432350	chrX:91158935-91590765	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3435339	chrX:91427773-91539017	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv532885	chrX:91428554-92377178	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:91524000-91528000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chrX:91524800-91527600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chrX:91525600-91527600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chrX:91526000-91527600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chrX:91526400-91527800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chrX:91526600-91528200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chrX:91526800-91527400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chrX:91526800-91528000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chrX:91526800-91532200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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