Variant report

Variant	rs397301
Chromosome Location	chr10:55333608-55333609
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs11003681	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11003682	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11527272	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11527477	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11527478	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1762109	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2484208	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2484209	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2632535	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2931565	0.89[EUR][1000 genomes]
rs2992011	0.89[EUR][1000 genomes]
rs34095257	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34497705	0.82[EUR][1000 genomes]
rs34632242	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs351799	0.86[EUR][1000 genomes]
rs351800	0.89[EUR][1000 genomes]
rs351801	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs351802	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs351803	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35424889	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35891588	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36065206	0.81[EUR][1000 genomes]
rs364694	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs365966	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs368110	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs368703	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs371543	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs372338	0.90[EUR][1000 genomes]
rs374009	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs374891	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs376278	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs379033	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs380989	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs381979	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs382870	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs386060	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs389244	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs392293	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs392668	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs394770	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs394942	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs395825	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs396374	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs398169	0.87[EUR][1000 genomes]
rs399032	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs399409	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs399606	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs401333	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs401407	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs404593	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs407337	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs407646	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs409001	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs409369	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs409814	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs413137	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs414849	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs418047	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs420314	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs423146	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs423384	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs423806	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs425467	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs426290	0.91[EUR][1000 genomes]
rs427201	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs427372	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs427506	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs428127	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs428467	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs428563	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs430495	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs433574	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs433582	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs436403	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs437390	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs440743	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs441336	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs443931	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs444186	0.81[ASN][1000 genomes]
rs444728	0.90[EUR][1000 genomes]
rs445488	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs447549	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs450516	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs451452	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs451485	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs451607	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs452019	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs453158	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs454270	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs455078	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4622165	0.81[EUR][1000 genomes]
rs4628595	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs596456	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs598529	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs598536	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs607228	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs607276	0.82[EUR][1000 genomes]
rs609908	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs610251	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61859905	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61859906	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61859907	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61859908	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs636340	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs637714	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6415918	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6481015	0.89[EUR][1000 genomes]
rs6481016	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs658983	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs659014	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs659421	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs663624	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs665850	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66668165	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66678299	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs668014	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs668434	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs674159	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs678459	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs689581	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7075007	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7898607	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7898708	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55324800-55334000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:55330200-55334000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:55330200-55334200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr10:55332200-55334600	Enhancers	Liver	Liver

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